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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Thhalv10009634m | ||||||||
Common Name | EUTSA_v10009634mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Family | SRS | ||||||||
Protein Properties | Length: 347aa MW: 37607 Da PI: 6.7253 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 224.5 | 2.1e-69 | 114 | 273 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa........aeaaskrkrelkskkqsals 87 r+g+++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaakrrerq+ql+ + sk++++a ++++ + +r + + sa + Thhalv10009634m 114 RQGSMNCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPAAKRRERQAQLTGLPSKRSREAssgggdddDDDRDNGNRGQGGGSGSAFA 207 7899****************************************************99988888777787754433444444445677889999 PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +t++++a+s+ le s+lP+e+s +avf+c+rvss+dd++ee+aYqtavsigGhvfkGiLydqG+++ Thhalv10009634m 208 CTRVVNASSS-GLESSHLPPEMSLPAVFQCMRVSSIDDEDEEYAYQTAVSIGGHVFKGILYDQGPSD 273 ***9999765.99999************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.2E-63 | 117 | 272 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.1E-27 | 119 | 161 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 1.7E-24 | 223 | 271 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009299 | Biological Process | mRNA transcription | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MAGLFYLGGR EDSKQDLHHQ NKDNSEDKSN NYLYLYKDEI YNNNKGFEIW PPQYFQHQQQ 60 QSPVAPTTNF YSFGMVPSGG SNNNNRGTNR SLYFNVVSDH EPVRSATGGF TVTRQGSMNC 120 QDCGNQAKKD CPHMRCRTCC KSRGFDCQTH VKSTWVPAAK RRERQAQLTG LPSKRSREAS 180 SGGGDDDDDD RDNGNRGQGG GSGSAFACTR VVNASSSGLE SSHLPPEMSL PAVFQCMRVS 240 SIDDEDEEYA YQTAVSIGGH VFKGILYDQG PSDHRYSSSP TATATETSQH HLNLLASTAS 300 AATTTAVTAS NINNATIDPS SLYTAATTPF NAFVAAGTPF FAPPRS* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00152 | DAP | Transfer from AT1G19790 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU205268 | 0.0 | GU205268.1 Brassica rapa subsp. pekinensis short internode related sequence 7 (SRS7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006416463.1 | 0.0 | hypothetical protein EUTSA_v10009634mg | ||||
Swissprot | Q9FXH7 | 0.0 | SRS7_ARATH; Protein SHI RELATED SEQUENCE 7 | ||||
TrEMBL | V4MSL5 | 0.0 | V4MSL5_EUTSA; Uncharacterized protein | ||||
STRING | Bra025768.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2645 | 25 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19790.2 | 1e-163 | SHI-related sequence 7 |
Link Out ? help Back to Top | |
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Phytozome | Thhalv10009634m |
Entrez Gene | 18992948 |